Configuring sequence reporting

By default, sequence reporting is disabled.

You can enable it in the values.yaml by configuring the sequenceFlagging section. For example:

sequenceFlagging:
  github:
    organization: pathoplexus
    repository: curation_reports
    issueTemplate: sequence-metadata-issue.md # (optional)

Sequence reporting is done through GitHub issues. You need to have a GitHub repository where the issues will be created. Set the organization and repository key to your organization and repository. You can optionally configure an issue template. Issue templates are found in the .github/ISSUE_TEMPLATES directory in your repository.